develop-bayer #1

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jebus wants to merge 9 commits from develop-bayer into develop

pull from: develop-bayer

merge into: :develop

:develop

:develop-bayer

:fix/ketcher_submission

:fix/issue204

:hotfix/login

:refactor/html_formatting

:fix/missing_nav_links

:feat/package_pred

:fix/frontpage_predict

:fix/search

:feature/leftovers

:enhancement/licenses

:feature/frontend_update

:fix/xss

:enhancement/dataset

:feature/engineered_pathways

:feature/tenants

:feature/manager_tests

:feature/normalization_rules

:main

Conversation 0 Commits 9 Files Changed 82

+1614550 -2934

jebus commented 2026-04-21 20:27:55 +12:00

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jebus added 12 commits 2026-04-21 20:27:55 +12:00

adjusted migration 22179f0d90

Initial bayer app 5aa39637dc

Show Pack Classification 21181c80ec

Adjusted docker compose to bayer specifics ca5a9a12be

Adjusted Dockerfile for Bayer 451986082a

Adding secret flags to group, add secret pools to packages 8ae4f36174

Adjusted View for Package creation 7d828e2be0

Prep configs, added Package Create Modal dd0f7eaf05

wip 349877b5e3

More on PES ca0508d96a

wip d1a00f71b4

wip f9f65de8b3

jebus force-pushed develop-bayer from f9f65de8b3 to 2e24666744 2026-04-22 08:24:10 +12:00 Compare

jebus force-pushed develop-bayer from 2e24666744 to 170f00504f 2026-04-22 08:51:44 +12:00 Compare

jebus force-pushed develop-bayer from 170f00504f to 54056c654d 2026-04-22 08:53:54 +12:00 Compare

jebus added 1 commit 2026-04-23 08:22:16 +12:00

Wip 72399b16b3

jebus added 1 commit 2026-05-05 23:04:08 +12:00

minor 15c23a2151

jebus added 1 commit 2026-05-07 19:07:41 +12:00

PW interactions ad1e575e4c

jebus added 1 commit 2026-05-07 21:19:34 +12:00

API PES e3876ac945

jebus force-pushed develop-bayer from e3876ac945 to 3b5d299128 2026-05-12 23:17:17 +12:00 Compare

jebus added 1 commit 2026-05-29 07:56:16 +12:00

wip 99c796813a

jebus force-pushed develop-bayer from 99c796813a to 3114e2df4c 2026-05-29 08:01:47 +12:00 Compare

jebus force-pushed develop-bayer from 3114e2df4c to 161a67b6d6 2026-05-29 08:18:18 +12:00 Compare

jebus force-pushed develop-bayer from 161a67b6d6 to e2da59634b 2026-06-09 19:33:14 +12:00 Compare

jebus added 1 commit 2026-06-09 20:07:23 +12:00

Make Select Widget reflect required ac297b2e25

jebus added 1 commit 2026-06-09 20:10:09 +12:00

make required generallay available 8ed3b506cc

jebus added 1 commit 2026-06-09 20:24:06 +12:00

Update UI if pathway mode is set to build 520fb9f510

jebus force-pushed develop-bayer from 520fb9f510 to 9aa52e1bbe 2026-06-11 00:56:57 +12:00 Compare

jebus force-pushed develop-bayer from 9aa52e1bbe to 66129f676d 2026-06-11 02:19:12 +12:00 Compare

jebus added 1 commit 2026-06-11 07:51:26 +12:00

Initial Zoom, fix AD Creation d0173cf2b0

jebus added 1 commit 2026-06-11 19:36:11 +12:00

wip 30dade391f

jebus force-pushed develop-bayer from 30dade391f to 6680668c89 2026-06-11 19:41:36 +12:00 Compare

jebus added 1 commit 2026-06-12 19:59:36 +12:00

auth log, bb4g fix 597213286a

jebus added 1 commit 2026-06-12 20:51:56 +12:00

missing import c367d24d9e

jebus force-pushed develop-bayer from c367d24d9e to 297c87f4d9 2026-06-17 08:39:00 +12:00 Compare

jebus added 3 commits 2026-06-19 19:55:31 +12:00

Added viz hint if PES is part of reaction 831496992c

Add Edge check for pes a2761dcaaf

flip boolean c4067cb11e

jebus added 1 commit 2026-06-22 07:23:32 +12:00

... d29cebfa0c

jebus added 1 commit 2026-06-22 07:23:49 +12:00

pes 2e2c6b3510

jebus added 1 commit 2026-06-22 07:34:55 +12:00

Added extra 687a90af0e

jebus added 1 commit 2026-06-24 07:20:11 +12:00

... 0842f67560

jebus added 1 commit 2026-07-02 06:55:48 +12:00

In / Out Edges Viz, Submitting Button Text 5c6b854bde

jebus added 1 commit 2026-07-02 06:56:03 +12:00

... 6c4cf8c71b

jebus force-pushed develop-bayer from 6c4cf8c71b to f9cc71d375 2026-07-02 20:20:27 +12:00 Compare

jebus force-pushed develop-bayer from f9cc71d375 to 1282b81d9d 2026-07-02 20:37:29 +12:00 Compare

jebus added 1 commit 2026-07-03 07:02:25 +12:00

Make PES Link clickable 5758fc67fe

jebus force-pushed develop-bayer from 5758fc67fe to caeec2ab79 2026-07-03 07:26:11 +12:00 Compare

jebus added 1 commit 2026-07-03 07:37:28 +12:00

Return proper http response instead of error a0ac79a897

jebus added 5 commits 2026-07-07 01:17:47 +12:00

Fixed error return, removed unused options 8017070de8

Fix PES Link HTML for other entities 365af14448

Fixed molfile assignment, adjusted Export 2fbffb4b3b

Package Export/Import cycle b0004ea66e

highlight Description links ce1d709715

jebus added 12 commits 2026-07-10 06:46:05 +12:00

implemented non persistent b77fbc9b90

Harmonised proposed field in Json output 6e2dbccd6c

Added pesLink field to PW Api output dfc1309fd3

PES Fields in API Output ea672ec91a

removed debug d06ed33196

Fix Classification import, Fix PES Deserialization 3bb9220b22

underline pes link in templates b5e3c1957b

Fix alter name/desc for node, make /node /edge funcitonal c65be30b6b

provide setting link and copy button 4ee37b5c71

Implemented Compound Names / Reaction Names View Option 8620f98082

Unconnected Nodes 28e5dbbcf5

Make links thicker, reduce timeout trigger time 57f5ce089c

jebus force-pushed develop-bayer from 57f5ce089c to d51f842203 2026-07-15 23:50:43 +12:00 Compare

jebus force-pushed develop-bayer from d51f842203 to 1d2bb85c90 2026-07-16 01:31:51 +12:00 Compare

jebus force-pushed develop-bayer from 1d2bb85c90 to 421d33dddc 2026-07-16 08:17:55 +12:00 Compare

jebus force-pushed develop-bayer from 421d33dddc to e5e0dcee3b 2026-07-17 08:26:38 +12:00 Compare

jebus added 1 commit 2026-07-17 20:34:11 +12:00

Provide proper Error Pages 230026147e

jebus added 1 commit 2026-07-17 20:52:11 +12:00

View Package Perm 3409a17ab8

jebus added 1 commit 2026-07-20 09:25:41 +12:00

wip 7e9f194425

jebus force-pushed develop-bayer from 7e9f194425 to 57f4262b8b 2026-07-20 09:33:33 +12:00 Compare

jebus added 1 commit 2026-07-20 09:37:07 +12:00

sync 7252eb8a13

jebus added 1 commit 2026-07-24 09:30:53 +12:00

Auth log 44698602c1

jebus force-pushed develop-bayer from 44698602c1 to aaa87c5f2f 2026-07-24 09:32:35 +12:00 Compare

jebus added 2 commits 2026-07-26 08:24:05 +12:00

auth log leftovers d72676710a

... 9bf65d4319

jebus added 1 commit 2026-07-26 08:50:29 +12:00

secret packs viz b9c3618c41

jebus added 1 commit 2026-07-27 06:54:41 +12:00

auth log for api 8b2caf3500

jebus added 1 commit 2026-07-27 07:06:53 +12:00

model stats e09e1fe048

jebus added 5 commits 2026-07-28 20:46:16 +12:00

Fix Package Adjustment c0c0e969dc

Adjust Group Auth Log 448edb3d40

Fix Secret image size in Navbar bbf4c54c12

leftover 1088586d9f

... 7653561833

jebus added 1 commit 2026-07-29 08:44:44 +12:00

minor 871448dde8

jebus force-pushed develop-bayer from 871448dde8 to 3b71184631 2026-08-20 06:57:36 +12:00 Compare

jebus force-pushed develop-bayer from 3b71184631 to 0033513d99 2026-08-20 07:10:39 +12:00 Compare

jebus added 1 commit 2026-08-20 18:59:29 +12:00

PES Adjustments, Check is User is in enviPath Entra Group 67aa3731cb

jebus added 2 commits 2026-08-27 21:46:16 +12:00

minor 48d2bce52a

Fix import f885745127

jebus added 1 commit 2026-08-28 23:14:47 +12:00

minor b54c8eaab6

jebus added 2 commits 2026-09-03 07:34:32 +12:00

reactionSmarts 887de03a19

wip d8741c5375

jebus added 1 commit 2026-09-03 22:04:19 +12:00

updated add if dep 0b325a30b7

jebus added 1 commit 2026-09-09 01:11:52 +12:00

wip b12c2dda69

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Reference: jebus/enviPy-bayer#1