forked from enviPath/enviPy
wip
This commit is contained in:
@@ -0,0 +1,18 @@
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# Generated by Django 6.0.3 on 2026-09-08 08:54
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from django.db import migrations, models
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class Migration(migrations.Migration):
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dependencies = [
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('bayer', '0003_pescompound_pesstructure_package_data_pool'),
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]
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operations = [
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migrations.AddField(
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model_name='package',
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name='shareable',
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field=models.BooleanField(default=True, verbose_name='Shareable'),
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),
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]
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@@ -23,6 +23,7 @@ class Package(EnviPathModel):
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license = models.ForeignKey(
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"epdb.License", on_delete=models.SET_NULL, blank=True, null=True, verbose_name="License"
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)
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shareable = models.BooleanField(verbose_name="Shareable", default=True)
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class Classification(models.IntegerChoices):
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INTERNAL = 0, "Internal"
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+2
-2
@@ -119,8 +119,8 @@ def create_pes_node(request, package_uuid, pathway_uuid):
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except ValueError as e:
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return error(
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request,
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"Could not fetch PES",
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f"Could not fetch PES data for {pes_link}"
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"Failed to fetch this PES",
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"Either the PES-ID is incorrect, or you're missing sufficient permissions to access this (potentially secret) item. In case you're missing permissions you can request the entitlement cs.u.enviPath_secret_data_user_group on go/idnow to gain access."
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)
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classification = pes_data.get("classificationLevel", "")
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+8
-2
@@ -77,7 +77,7 @@ def entra_callback(request):
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return error(
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request,
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"Login Failed",
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"The user is not authenticated. A reason for this might be a missing assignment to the respective enviPath group.",
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"Request access to role 1230/MON/APPS/Envipath/Envipath_Prod on go/idnow",
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403,
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)
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@@ -139,10 +139,16 @@ def entra_callback(request):
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auth_log.info(f"Login Group Sync: Adding {u.username} to Group {g.name} ({ uuid })")
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else:
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g = Group.objects.get(uuid=uuid)
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if g.user_member.contains(u):
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# Do not remove users from All enviPath Users
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if g.user_member.contains(u) and g.name != 'All enviPath Users':
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g.user_member.remove(u)
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auth_log.info(f"Login Group Sync: Removing {u.username} from Group {g.name} ({ uuid })")
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# Ensure people are part of All enviPath Users -> they have to as, envipath_registered_user is granted
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all_envipath_users = Group.objects.get(name="All enviPath Users")
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if not all_envipath_users.user_member.contains(u):
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all_envipath_users.user_member.add(u)
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if registered:
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# #72 make package secret if user is part of a secret group
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for id, name in s.ENTRA_SECRET_GROUPS.items():
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+5
-2
@@ -211,7 +211,7 @@ class UserManager(object):
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# Create package
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package_name = f"{u.username}{'’' if u.username[-1] in 'sxzß' else 's'} Package"
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package_description = "This package was generated during registration."
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p = PackageManager.create_package(u, package_name, package_description)
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p = PackageManager.create_package(u, package_name, package_description, shareable=False)
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u.default_package = p
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u.save()
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@@ -547,7 +547,7 @@ class PackageManager(object):
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@staticmethod
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@transaction.atomic
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def create_package(current_user, name: str, description: str = None):
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def create_package(current_user, name: str, description: str = None, *args, **kwargs):
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p = Package()
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# Clean for potential XSS
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@@ -556,6 +556,9 @@ class PackageManager(object):
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if description is not None and description.strip() != "":
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p.description = nh3.clean(description.strip(), tags=s.ALLOWED_HTML_TAGS).strip()
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if "shareable" in kwargs:
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p.shareable = kwargs["shareable"]
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p.save()
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up = UserPackagePermission()
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@@ -7,6 +7,7 @@
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<i class="glyphicon glyphicon-edit"></i> Edit Package</a
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>
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</li>
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{% if meta.current_package.shareable %}
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<li>
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<a
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role="button"
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@@ -15,6 +16,7 @@
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<i class="glyphicon glyphicon-user"></i> Edit Permissions</a
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>
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</li>
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{% endif %}
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{% if meta.current_package.get_classification_level_display != "Secret" %}
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<li>
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<a
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@@ -52,7 +54,7 @@
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>
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</li>
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{% endif %}
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{% if not meta.can_edit %}
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{% if not meta.can_edit and meta.current_package.shareable %}
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<li>
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<a
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role="button"
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@@ -7,6 +7,7 @@
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<i class="glyphicon glyphicon-edit"></i> Update</a
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>
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</li>
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{% if 1 == 0 %}
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<li>
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<a
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role="button"
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@@ -15,6 +16,7 @@
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<i class="glyphicon glyphicon-lock"></i> Update Password</a
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>
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</li>
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{% endif %}
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<li>
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<a
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role="button"
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@@ -180,12 +180,26 @@
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>Aspartame</a
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>
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</div>
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<a
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class="absolute top-0 left-[calc(100%-5.4rem)]"
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href="/predict"
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>Advanced</a
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>
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</div>
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{% if meta.current_package %}
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<div
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class="mt-4 rounded-lg border border-base-300 bg-base-50 px-4 py-2.5 text-sm text-base-content/70"
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>
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Prediction will be stored in
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<strong class="text-base-content"
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>{{ meta.current_package.name|safe }}</strong
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>
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{% if meta.user.default_setting %}
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using setting
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<strong class="text-base-content"
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>{{ meta.user.default_setting.name|safe }}</strong
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>
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{% endif %}
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<br />
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To use a different setting click
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<a class="label link" href="/predict">here</a>
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</div>
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{% endif %}
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</div>
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<div
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id="ketcher-container"
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@@ -208,9 +222,25 @@
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>
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Predict!
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</button>
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<div class="mt-1 flex w-full justify-end">
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<a class="label justify-end" href="/predict">Advanced</a>
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</div>
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{% if meta.current_package %}
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<div
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class="mt-4 rounded-lg border border-base-300 bg-base-50 px-4 py-2.5 text-sm text-base-content/70"
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>
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Prediction will be stored in
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<strong class="text-base-content"
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>{{ meta.current_package.name|safe }}</strong
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>
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{% if meta.user.default_setting %}
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using setting
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<strong class="text-base-content"
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>{{ meta.user.default_setting.name|safe }}</strong
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>
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{% endif %}
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<br />
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To use a different setting click
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<a class="label link" href="/predict">here</a>
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</div>
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{% endif %}
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</div>
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<input
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type="hidden"
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