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33 Commits
Author SHA1 Message Date
jebusandTim Lorsbach ab0b5a5186 [Feature] Leftovers after Release (#303) 
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#303
 2026-01-22 10:26:38 +13:00
liambrydonandt03i 4bf20e62ef [Fix] UI Fixes (#266) 
Rather than have a bunch of pull-requests that @jebus will have to merge shall we collect some of the fixes for the UI issues I found in here.

- [x] #259
- [x] #260
- [x] #261
- [x] #262
- [x] #263
- [x] #264
- [x] #265

Co-authored-by: Tobias O <tobias.olenyi@envipath.com>
Reviewed-on: enviPath/enviPy#266
Co-authored-by: Liam Brydon <lbry121@aucklanduni.ac.nz>
Co-committed-by: Liam Brydon <lbry121@aucklanduni.ac.nz>
 2025-12-15 21:28:43 +13:00
jebusandTim Lorsbach d2d475b990 [Feature] Show Multi Gen Eval + Batch Prediction (#267) 
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#267
 2025-12-15 08:48:28 +13:00
jebusandTim Lorsbach 648ec150a9 [Feature] Engineer Pathway (#256) 
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#256
 2025-12-10 07:35:42 +13:00
jebusandTim Lorsbach fd2e2c2534 [Fix] Post Modern UI deploy Bugfixes (#240) 
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#240
 2025-11-27 10:28:04 +13:00
t03iandTim Lorsbach 1a2c9bb543 [Feature] Modern UI roll out (#236) 
This PR moves all the collection pages into the new UI in a rough push.
I did not put the same amount of care into these as into search, index, and predict.

## Major changes

- All modals are now migrated to a state based alpine.js implementation.
- jQuery is no longer present in the base layout; ajax is replace by native fetch api
- most of the pps.js is now obsolte (as I understand it; the code is not referenced any more @jebus  please double check)
- in-memory pagination for large result lists (set to 50; we can make that configurable later; performance degrades at around 1k) stukk a bit rough tracked in #235

## Minor things

- Sarch and index also use alpine now
- The loading spinner is now CSS animated (not sure if it currently gets correctly called)

## Not done

- Ihave not even cheked the admin pages. Not sure If these need migrations
- The temporary migration pages still use the old template. Not sure what is supposed to happen with those? @jebus

## What I did to test

- opend all pages in browse, and user ; plus all pages reachable from there.
- Interacted and tested the functionality of each modal superfically with exception of the API key modal (no functional test).

---
This PR is massive sorry for that; just did not want to push half-brokenn state.
@jebus @liambrydon I would be glad if you could click around and try to break it :)

Finally closes #133

Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#236
Co-authored-by: Tobias O <tobias.olenyi@envipath.com>
Co-committed-by: Tobias O <tobias.olenyi@envipath.com>
 2025-11-26 23:16:44 +13:00
t03iandTim Lorsbach 21d30a923f [Refactor] Large scale formatting/linting (#193) 
All html files now prettier formatted and fixes for incompatible blocks applied

Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#193
Co-authored-by: Tobias O <tobias.olenyi@envipath.com>
Co-committed-by: Tobias O <tobias.olenyi@envipath.com>
 2025-11-12 22:47:10 +13:00
jebusandTim Lorsbach 9deca8867e [Feature] Possibility to Retrain Models (#190) 
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#190
 2025-11-12 10:28:35 +13:00
liambrydonLiam BrydonjebusTim Lorsbach
 		df6056fb86 [Enhancement] Refactor of license django model (#187) 
Fixes #119

Licenses are now created in the bootstrap management command. To only create the licenses use the command line argument `-ol` or `--only-licenses`.
These licenses are then fetched by there `cc_string` when adding a license to a package.

Co-authored-by: Liam Brydon <62733830+MyCreativityOutlet@users.noreply.github.com>
Co-authored-by: jebus <lorsbach@envipath.com>
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#187
Co-authored-by: liambrydon <lbry121@aucklanduni.ac.nz>
Co-committed-by: liambrydon <lbry121@aucklanduni.ac.nz>
 2025-11-12 08:20:43 +13:00
liambrydonLiam BrydonjebusTim Lorsbach
 		34589efbde [Fix] Mitigate XSS attack vector by cleaning input before it hits our Database (#171) 
## Changes

- All text input fields are now cleaned with nh3 to remove html tags. We allow certain html tags under `settings.py/ALLOWED_HTML_TAGS` so we can easily update the tags we allow in the future.
- All names and descriptions now use the template tag `nh_safe` in all html files.
- Usernames and emails are a small exception and are not allowed any html tags

Co-authored-by: Liam Brydon <62733830+MyCreativityOutlet@users.noreply.github.com>
Co-authored-by: jebus <lorsbach@envipath.com>
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#171
Reviewed-by: jebus <lorsbach@envipath.com>
Co-authored-by: liambrydon <lbry121@aucklanduni.ac.nz>
Co-committed-by: liambrydon <lbry121@aucklanduni.ac.nz>
 2025-11-11 22:49:55 +13:00
jebus 13ed86a780 [Feature] Identify Missing Rules (#177) 
Fixes #97
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#177
 2025-10-30 00:47:45 +13:00
jebusandTim Lorsbach a952c08469 [Feature] Basic logging of Jobs, Model Evaluation (#169) 
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#169
 2025-10-27 22:34:05 +13:00
jebusandTim Lorsbach 1f863fdcd6 [Fix] Remove Scenarios from Objects (#159) 
Fixes #155

Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#159
 2025-10-15 20:23:52 +13:00
jebusandTim Lorsbach 68a3f3b982 [Feature] Alias Support (#151) 
Fixes #149

Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#151
 2025-10-09 23:14:34 +13:00
jebusandTim Lorsbach 7ad4112343 [Feature] External Identifier/References 
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#139
 2025-10-02 00:40:00 +13:00
jebusandTim Lorsbach 3f5bb76633 [Fix] Remove all Scenarios, catch empty SMILES, prevent default Package delete (#134) 
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#134
 2025-09-30 19:10:57 +13:00
jebusandTim Lorsbach 50db2fb372 [Feature] MultiGen Eval (Backend) (#117) 
Fixes #16

Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#117
 2025-09-18 18:40:45 +12:00
jebusandTim Lorsbach 762a6b7baf [Feature] Package Export/Import (#116) 
Fixes #90
Fixes #91
Fixes #115
Fixes #104

Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#116
 2025-09-16 02:41:10 +12:00
jebusandTim Lorsbach 31783306e2 [Feature] Pathway SVG Export (#102) 
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#102
 2025-09-10 18:44:18 +12:00
jebusandTim Lorsbach 5477b5b3d4 [Feature] Rule Based Model (#92) 
Fixes #89

Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#92
 2025-09-09 19:32:12 +12:00
jebusandTim Lorsbach 2babe7f7e2 [Feature] Scenario Creation (#78) 
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#78
 2025-09-02 08:06:18 +12:00
jebusandTim Lorsbach 02d84a9b29 Fix wrong Button Label in "Compound -> Edit" (#64) 
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#64
 2025-08-28 06:32:42 +12:00
jebusandTim Lorsbach 00d9188c0c Copy Objects between Packages (#59) 
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#59
 2025-08-28 06:27:11 +12:00
jebusandTim Lorsbach b95ec98a2f Added Shortcut to make Packages Public (#54) 
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#54
 2025-08-22 07:31:08 +12:00
jebusandTim Lorsbach 6e6b394289 Cleanup (#52) 
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#52
 2025-08-22 06:36:22 +12:00
jebusandTim Lorsbach ec387cc12e Added UI elements to add/remove Scenarios to various objects (#51) 
Fixes #23

Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#51
 2025-08-21 07:56:44 +12:00
jebusandTim Lorsbach 79b4b1586c Download Pathway Functionality (#38) 
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#38
 2025-07-31 01:30:16 +12:00
jebusandTim Lorsbach df896878f1 Basic System (#31) 
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#31
 2025-07-23 06:47:07 +12:00
jebusandTim Lorsbach 9323a9f7d7 Implement Compound CRUD (#22) 
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#22
 2025-07-03 07:17:04 +12:00
jebusandTim Lorsbach 4e58a1fad7 Implement functionality to assigne Licenses to Packages and show existing Licenses (#17) 
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#17
 2025-07-03 06:28:49 +12:00
jebusandTim Lorsbach bcd9451450 Implement basic Group handling (#3) 
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#3
 2025-06-26 00:18:40 +12:00
jebusandTim Lorsbach 844d0708c9 Granting/Updating Permission for Packages (#2) 
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#2
 2025-06-25 08:49:58 +12:00
Tim Lorsbach ded50edaa2 Current Dev State 2025-06-23 20:13:54 +02:00