6 Commits

Include renames

Author	SHA1	Message	Date
Tim Lorsbach	3b71184631	adjusted migration ... Initial bayer app Show Pack Classification Adjusted docker compose to bayer specifics Adjusted Dockerfile for Bayer Adding secret flags to group, add secret pools to packages Adjusted View for Package creation Prep configs, added Package Create Modal wip More on PES wip wip Wip minor PW interactions API PES wip Make Select Widget reflect required make required generallay available Update UI if pathway mode is set to build Added ais circle adjustments Initial Zoom, fix AD Creation wip auth log, bb4g fix missing import Added viz hint if PES is part of reaction Add Edge check for pes flip boolean ... pes Added extra ... In / Out Edges Viz, Submitting Button Text ... Make PES Link clickable Return proper http response instead of error Fixed error return, removed unused options Fix PES Link HTML for other entities Fixed molfile assignment, adjusted Export Package Export/Import cycle highlight Description links implemented non persistent Harmonised proposed field in Json output Added pesLink field to PW Api output PES Fields in API Output removed debug Fix Classification import, Fix PES Deserialization underline pes link in templates Fix alter name/desc for node, make /node /edge funcitonal provide setting link and copy button Implemented Compound Names / Reaction Names View Option Unconnected Nodes Make links thicker, reduce timeout trigger time Show proposed info in popover Pathway Build no stereo removal Include probs in reaction name option viz Detect clicks outside nodes/edges Provide proper Error Pages View Package Perm wip sync Auth log auth log leftovers ... secret packs viz auth log for api model stats Fix Package Adjustment Adjust Group Auth Log Fix Secret image size in Navbar leftover ... minor	2026-08-19 20:57:12 +02:00
t03iandTim Lorsbach	1a2c9bb543	[Feature] Modern UI roll out (#236) ... This PR moves all the collection pages into the new UI in a rough push. I did not put the same amount of care into these as into search, index, and predict. ## Major changes - All modals are now migrated to a state based alpine.js implementation. - jQuery is no longer present in the base layout; ajax is replace by native fetch api - most of the pps.js is now obsolte (as I understand it; the code is not referenced any more @jebus please double check) - in-memory pagination for large result lists (set to 50; we can make that configurable later; performance degrades at around 1k) stukk a bit rough tracked in #235 ## Minor things - Sarch and index also use alpine now - The loading spinner is now CSS animated (not sure if it currently gets correctly called) ## Not done - Ihave not even cheked the admin pages. Not sure If these need migrations - The temporary migration pages still use the old template. Not sure what is supposed to happen with those? @jebus ## What I did to test - opend all pages in browse, and user ; plus all pages reachable from there. - Interacted and tested the functionality of each modal superfically with exception of the API key modal (no functional test). --- This PR is massive sorry for that; just did not want to push half-brokenn state. @jebus @liambrydon I would be glad if you could click around and try to break it :) Finally closes #133 Co-authored-by: Tim Lorsbach <tim@lorsba.ch> Reviewed-on: enviPath/enviPy#236 Co-authored-by: Tobias O <tobias.olenyi@envipath.com> Co-committed-by: Tobias O <tobias.olenyi@envipath.com>	2025-11-26 23:16:44 +13:00
t03iandTim Lorsbach	ddf1fd3515	Frontpage update (#179) ... This PR introduces an overhaul for the front page and login features while keeping the rest of the application intact. ## Major Changes - TailwindCSS + DaisyUI Integration: Add modern CSS framework for component-based utility styling - Build System: Added pnpm for CSS building; can be extended for updated frontend builds in the future - Navbar + Footer: Redesigned and includable; old version retained for unstyled elements - Optimized Assets: Added minified and CSS-stylable logos ## New Features - Static Pages: Added comprehensive mockups of static pages (legal, privacy policy, terms of use, contact, etc.). **Note:** These have to be fixed before a public release, as their content is largely unreviewed and incorrect. Probably best to do in a separate PR that only contains updates to these. - Discourse API: Implement minimal features based on RestAPI for controllable results. ## Current bugs - [x] The static pages include the default navbar and footer on the login page. This will likely not work, as users need to access it before logging in; no good workaround so far (problem with Django templating system). - [ ] The front page predict link is currently non-functional; the redesigned page is almost ready but better done in a separate PR as it also touches Django code. - [x] Visual bug with the news cards. Still intend to fix for this PR Co-authored-by: Tim Lorsbach <tim@lorsba.ch> Reviewed-on: enviPath/enviPy#179 Reviewed-by: jebus <lorsbach@envipath.com> Co-authored-by: Tobias O <tobias.olenyi@envipath.com> Co-committed-by: Tobias O <tobias.olenyi@envipath.com>	2025-11-12 01:09:39 +13:00
jebusandTim Lorsbach	ef697ac5f5	[Fix] Added UZH Affiliation, Update UoA Images (#153) ... Co-authored-by: Tim Lorsbach <tim@lorsba.ch> Reviewed-on: enviPath/enviPy#153	2025-10-15 19:25:23 +13:00
jebusandTim Lorsbach	df896878f1	Basic System (#31) ... Co-authored-by: Tim Lorsbach <tim@lorsba.ch> Reviewed-on: enviPath/enviPy#31	2025-07-23 06:47:07 +12:00
Tim Lorsbach	ded50edaa2	Current Dev State	2025-06-23 20:13:54 +02:00