Commit Graph
18 Commits
Author SHA1 Message Date
Tim Lorsbach 3b71184631 adjusted migration
CI / test (pull_request) Failing after 27s
API CI / api-tests (pull_request) Failing after 41s
Initial bayer app

Show Pack Classification

Adjusted docker compose to bayer specifics

Adjusted Dockerfile for Bayer

Adding secret flags to group, add secret pools to packages

Adjusted View for Package creation

Prep configs, added Package Create Modal

wip

More on PES

wip

wip

Wip

minor

PW interactions

API PES

wip

Make Select Widget reflect required

make required generallay available

Update UI if pathway mode is set to build

Added ais

circle adjustments

Initial Zoom, fix AD Creation

wip

auth log, bb4g fix

missing import

Added viz hint if PES is part of reaction

Add Edge check for pes

flip boolean

...

pes

Added extra

...

In / Out Edges Viz, Submitting Button Text

...

Make PES Link clickable

Return proper http response instead of error

Fixed error return, removed unused options

Fix PES Link HTML for other entities

Fixed molfile assignment, adjusted Export

Package Export/Import cycle

highlight Description links

implemented non persistent

Harmonised proposed field in Json output

Added pesLink field to PW Api output

PES Fields in API Output

removed debug

Fix Classification import, Fix PES Deserialization

underline pes link in templates

Fix alter name/desc for node, make /node /edge funcitonal

provide setting link and copy button

Implemented Compound Names / Reaction Names View Option

Unconnected Nodes

Make links thicker, reduce timeout trigger time

Show proposed info in popover

Pathway Build no stereo removal

Include probs in reaction name option viz

Detect clicks outside nodes/edges

Provide proper Error Pages

View Package Perm

wip

sync

Auth log

auth log leftovers

...

secret packs viz

auth log for api

model stats

Fix Package Adjustment

Adjust Group Auth Log

Fix Secret image size in Navbar

leftover

...

minor
2026-08-19 20:57:12 +02:00
jebusandTim Lorsbach c6ff97694d [Feature] PEPPER in enviPath (#332)
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#332
2026-03-06 22:11:22 +13:00
jebusandTim Lorsbach d2c2e643cb [Fix] Compound Grouping, Identity prediction of enviFormer, Setting params (#337)
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#337
2026-02-20 10:14:28 +13:00
jebusandTim Lorsbach 5565b9cb9e [Fix] UI bugs, Registrations Mail, BTRules Popup, Legacy API fixes (#309)
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#309
2026-01-29 11:13:34 +13:00
jebusandTim Lorsbach d2d475b990 [Feature] Show Multi Gen Eval + Batch Prediction (#267)
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#267
2025-12-15 08:48:28 +13:00
jebusandTim Lorsbach 648ec150a9 [Feature] Engineer Pathway (#256)
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#256
2025-12-10 07:35:42 +13:00
jebusandTim Lorsbach a8554c903c [Enhancement] Swappable Packages (#216)
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#216
Reviewed-by: liambrydon <lbry121@aucklanduni.ac.nz>
Reviewed-by: Tobias O <tobias.olenyi@envipath.com>
2025-11-14 21:42:39 +13:00
jebusandTim Lorsbach 305fdc41fb [Fix] Replace datetime.now() with Djangos timezone.now() to get rid of NaiveTimestamp warning (#191)
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#191
2025-11-12 11:04:00 +13:00
jebus 13ed86a780 [Feature] Identify Missing Rules (#177)
Fixes #97
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#177
2025-10-30 00:47:45 +13:00
jebusandTim Lorsbach a952c08469 [Feature] Basic logging of Jobs, Model Evaluation (#169)
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#169
2025-10-27 22:34:05 +13:00
liambrydonandLiam Brydon 376fd65785 [Feature] ML model caching for reducing prediction overhead (#156)
The caching is now finished. The cache is created in `settings.py` giving us the most flexibility for using it in the future.

The cache is currently updated/accessed by `tasks.py/get_ml_model` which can be called from whatever task needs to access ml models in this way (currently, `predict` and `predict_simple`).

This implementation currently caches all ml models including the relative reasoning. If we don't want this and only want to cache enviFormer, i can change it to that. However, I don't think there is a harm in having the other models be cached as well.

Co-authored-by: Liam Brydon <62733830+MyCreativityOutlet@users.noreply.github.com>
Reviewed-on: enviPath/enviPy#156
Co-authored-by: liambrydon <lbry121@aucklanduni.ac.nz>
Co-committed-by: liambrydon <lbry121@aucklanduni.ac.nz>
2025-10-16 08:58:36 +13:00
jebusandTim Lorsbach afeb56622c [Chore] Linted Files (#150)
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#150
2025-10-09 07:25:13 +13:00
jebusandTim Lorsbach 50db2fb372 [Feature] MultiGen Eval (Backend) (#117)
Fixes #16

Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#117
2025-09-18 18:40:45 +12:00
jebusandTim Lorsbach 5477b5b3d4 [Feature] Rule Based Model (#92)
Fixes #89

Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#92
2025-09-09 19:32:12 +12:00
jebusandTim Lorsbach c3c1d4f5cf App Domain Pathway Prediction (#47)
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#47
2025-08-19 02:53:56 +12:00
jebusandTim Lorsbach 579cd519d0 Experimental App Domain (#43)
Backend App Domain done, Frontend missing

Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#43
2025-08-08 20:52:21 +12:00
jebusandTim Lorsbach df896878f1 Basic System (#31)
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#31
2025-07-23 06:47:07 +12:00
Tim Lorsbach ded50edaa2 Current Dev State 2025-06-23 20:13:54 +02:00