3 Commits

Include renames

Author	SHA1	Message	Date
Tim Lorsbach	3b71184631	adjusted migration ... Initial bayer app Show Pack Classification Adjusted docker compose to bayer specifics Adjusted Dockerfile for Bayer Adding secret flags to group, add secret pools to packages Adjusted View for Package creation Prep configs, added Package Create Modal wip More on PES wip wip Wip minor PW interactions API PES wip Make Select Widget reflect required make required generallay available Update UI if pathway mode is set to build Added ais circle adjustments Initial Zoom, fix AD Creation wip auth log, bb4g fix missing import Added viz hint if PES is part of reaction Add Edge check for pes flip boolean ... pes Added extra ... In / Out Edges Viz, Submitting Button Text ... Make PES Link clickable Return proper http response instead of error Fixed error return, removed unused options Fix PES Link HTML for other entities Fixed molfile assignment, adjusted Export Package Export/Import cycle highlight Description links implemented non persistent Harmonised proposed field in Json output Added pesLink field to PW Api output PES Fields in API Output removed debug Fix Classification import, Fix PES Deserialization underline pes link in templates Fix alter name/desc for node, make /node /edge funcitonal provide setting link and copy button Implemented Compound Names / Reaction Names View Option Unconnected Nodes Make links thicker, reduce timeout trigger time Show proposed info in popover Pathway Build no stereo removal Include probs in reaction name option viz Detect clicks outside nodes/edges Provide proper Error Pages View Package Perm wip sync Auth log auth log leftovers ... secret packs viz auth log for api model stats Fix Package Adjustment Adjust Group Auth Log Fix Secret image size in Navbar leftover ... minor	2026-08-19 20:57:12 +02:00
t03i	5f5ae76182	[Fix] Fix Prediction Spinner, ensure proper pathway status is set ... Fixes Spinner and status message display on pathway page Reviewed-on: enviPath/enviPy#291 Co-authored-by: Tobias O <tobias.olenyi@envipath.com> Co-committed-by: Tobias O <tobias.olenyi@envipath.com>	2026-01-15 23:09:12 +13:00
3 people	36879c266b	[Feature] Documentation for development setup ... ## Summary This PR improves the local development setup experience by adding Docker Compose and Makefile for streamlined setup. ## Changes - **Added `docker-compose.yml`**: for one-command PostgreSQL database setup - **Added `Makefile`**: Convenient shortcuts for common dev tasks (\`make setup\`, \`make dev\`, etc.) - **Updated `README.md`**: Quick development setup instructions using Make - - **Added**: RDkit installation pain point documentation - **Fixed**: Made Java feature properly dependent ## Why these changes? The application uses PostgreSQL-specific features (\`ArrayField\`) and requires an anonymous user created by the bootstrap command. This PR makes the setup process trivial for new developers: ```bash cp .env.local.example .env make setup # Starts DB, runs migrations, bootstraps data make dev # Starts development server ``` Java fix: Moved global Java import to inline to avoid everyone having to configure the Java path. Numerous changes to view and settings. - Applied ruff-formatting ## Testing Verified complete setup from scratch works with: - PostgreSQL running in Docker - All migrations applied - Bootstrap data loaded successfully - Anonymous user created - The development server starts correctly. Co-authored-by: Tobias O <tobias.olenyi@tum.de> Co-authored-by: Tobias O <tobias.olenyi@envipath.com> Co-authored-by: Liam <62733830+limmooo@users.noreply.github.com> Reviewed-on: enviPath/enviPy#143 Reviewed-by: jebus <lorsbach@envipath.com> Reviewed-by: liambrydon <lbry121@aucklanduni.ac.nz> Co-authored-by: t03i <mail+envipath@t03i.net> Co-committed-by: t03i <mail+envipath@t03i.net>	2025-10-08 18:51:50 +13:00