jebus/enviPy-bayer
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1282b81d9d0a15731c93f1e101fd710382e8f005
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14 Commits
Author SHA1 Message Date
Tim Lorsbach 1282b81d9d adjusted migration
CI / test (pull_request) Failing after 23s
Details
API CI / api-tests (pull_request) Failing after 17s
Details 
Initial bayer app

Show Pack Classification

Adjusted docker compose to bayer specifics

Adjusted Dockerfile for Bayer

Adding secret flags to group, add secret pools to packages

Adjusted View for Package creation

Prep configs, added Package Create Modal

wip

More on PES

wip

wip

Wip

minor

PW interactions

API PES

wip

Make Select Widget reflect required

make required generallay available

Update UI if pathway mode is set to build

Added ais

circle adjustments

Initial Zoom, fix AD Creation

wip

auth log, bb4g fix

missing import

Added viz hint if PES is part of reaction

Add Edge check for pes

flip boolean

...

pes

Added extra

...

In / Out Edges Viz, Submitting Button Text

...
 2026-07-02 10:37:13 +02:00
t03iandTim Lorsbach 1a2c9bb543 [Feature] Modern UI roll out (#236) 
This PR moves all the collection pages into the new UI in a rough push.
I did not put the same amount of care into these as into search, index, and predict.

## Major changes

- All modals are now migrated to a state based alpine.js implementation.
- jQuery is no longer present in the base layout; ajax is replace by native fetch api
- most of the pps.js is now obsolte (as I understand it; the code is not referenced any more @jebus  please double check)
- in-memory pagination for large result lists (set to 50; we can make that configurable later; performance degrades at around 1k) stukk a bit rough tracked in #235

## Minor things

- Sarch and index also use alpine now
- The loading spinner is now CSS animated (not sure if it currently gets correctly called)

## Not done

- Ihave not even cheked the admin pages. Not sure If these need migrations
- The temporary migration pages still use the old template. Not sure what is supposed to happen with those? @jebus

## What I did to test

- opend all pages in browse, and user ; plus all pages reachable from there.
- Interacted and tested the functionality of each modal superfically with exception of the API key modal (no functional test).

---
This PR is massive sorry for that; just did not want to push half-brokenn state.
@jebus @liambrydon I would be glad if you could click around and try to break it :)

Finally closes #133

Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#236
Co-authored-by: Tobias O <tobias.olenyi@envipath.com>
Co-committed-by: Tobias O <tobias.olenyi@envipath.com>
 2025-11-26 23:16:44 +13:00
t03iandTim Lorsbach 21d30a923f [Refactor] Large scale formatting/linting (#193) 
All html files now prettier formatted and fixes for incompatible blocks applied

Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#193
Co-authored-by: Tobias O <tobias.olenyi@envipath.com>
Co-committed-by: Tobias O <tobias.olenyi@envipath.com>
 2025-11-12 22:47:10 +13:00
liambrydonLiam BrydonjebusTim Lorsbach
 		34589efbde [Fix] Mitigate XSS attack vector by cleaning input before it hits our Database (#171) 
## Changes

- All text input fields are now cleaned with nh3 to remove html tags. We allow certain html tags under `settings.py/ALLOWED_HTML_TAGS` so we can easily update the tags we allow in the future.
- All names and descriptions now use the template tag `nh_safe` in all html files.
- Usernames and emails are a small exception and are not allowed any html tags

Co-authored-by: Liam Brydon <62733830+MyCreativityOutlet@users.noreply.github.com>
Co-authored-by: jebus <lorsbach@envipath.com>
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#171
Reviewed-by: jebus <lorsbach@envipath.com>
Co-authored-by: liambrydon <lbry121@aucklanduni.ac.nz>
Co-committed-by: liambrydon <lbry121@aucklanduni.ac.nz>
 2025-11-11 22:49:55 +13:00
jebusandTim Lorsbach 386098b8a6 [Feature] EnzymeLink Annotations (#152) 
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#152
 2025-10-15 19:35:26 +13:00
jebusandTim Lorsbach 68a3f3b982 [Feature] Alias Support (#151) 
Fixes #149

Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#151
 2025-10-09 23:14:34 +13:00
jebusandTim Lorsbach 7ad4112343 [Feature] External Identifier/References 
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#139
 2025-10-02 00:40:00 +13:00
jebusandTim Lorsbach 00d9188c0c Copy Objects between Packages (#59) 
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#59
 2025-08-28 06:27:11 +12:00
jebusandTim Lorsbach 6e6b394289 Cleanup (#52) 
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#52
 2025-08-22 06:36:22 +12:00
jebusandTim Lorsbach ec387cc12e Added UI elements to add/remove Scenarios to various objects (#51) 
Fixes #23

Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#51
 2025-08-21 07:56:44 +12:00
jebusandTim Lorsbach a7637d046a External References (#50) 
Fix for #24

Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#50
 2025-08-21 06:11:05 +12:00
jebusandTim Lorsbach df896878f1 Basic System (#31) 
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#31
 2025-07-23 06:47:07 +12:00
jebusandTim Lorsbach 9950112311 Implemented Reaction Page (#5) 
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#5
 2025-06-28 06:40:58 +12:00
Tim Lorsbach ded50edaa2 Current Dev State 2025-06-23 20:13:54 +02:00